The Web Tool


This Web tool is for finding single copy orthologous exon or intron markers for phylogeny inference. It is suitable for small data sets (gunzipped files <10 MB). If you have large data sets, you are advised to use our standalone tool, which has quite a few more options in it. You can download Sample Files to test the tool.

The Web tool involves the following four steps:

1. Marker Type: Exon       Intron
2. Data Type: GenBank:(gzipped gbk file)    FASTA(.fas file)

3. Parameters:
  Minimum Exon size:  
  Maximum Exon Size:
  Minimum Identity:  
  Minimum Coverage:

4. Upload Files

Input files need to have the extension of .gz for GenBank files (they need to be gzipped), and .fas for FASTA files.

Number of Genomes to Compare:       (Click OK to upload files)

 









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News

Summer/Fall 2010
By: admin on 02-21-2011 at 10:52
Lots of things have changed! Phylomarke... Read More
Spring/Summer 2010
By: admin on 06-15-2010 at 02:06
Website has been updated to a new style.... Read More
Summer/Fall 2009
By: admin on 06-15-2010 at 02:03
run.pl has been extensively developed. P... Read More
Spring 2009
By: admin on 06-15-2010 at 02:01
Source code has been tested quite extens... Read More
2008
By: admin on 06-15-2010 at 02:01
Thaine Rowley took over the project. ... Read More
Enjoy!