Home
Phylomarker - mining phylogenetic markers for assembling the Tree of Life
Home
Bioinformatics Pipeline
Web Tool
Source Code
Results
Updates
FAQ's
This project is dedicated to developing a bioinformatics pipeline for mining nuclear gene markers for phylogeny inference.
Results
1. Exons in four model species of fish
Danio rerion(version: Zv5):
6746
Takifugu rubripes (version: Fugu 2.0):
3483
Gasterosteus aculeatus (version: BROAD S1):
3283
Oryzias latipes (version: MEDAKA 1):
2873
2. Putative single copy exons in four model species of fish
Danio rerion:
2797
Takifugu rubripes:
1822
Gasterosteus aculeatus:
2132
Oryzias latipes:
1809
3. Putative orthologs between model fish species
Danio rerion vs Takifugu rubripes:
138
Danio rerionvs vs Gasterosteus aculeatus:
131*
Danio rerion vs Oryzias latipes:
113*
Takifugu rubripes vs Gasterosteus aculeatus:
281
Takifugu rubripes vs Oryzias latipes:
208
Gasterosteus aculeatus vs Oryzias latipes:
225
* 20% coverage applied instead of 50%.
4. Putative orthologs among model fish species
(Takifugu rubripes vs Oryzias latipes) AND (Takifugu rubripes vs Gasterosteus aculeatus):
155
(Takifugu rubripes vs Oryzias latipes) AND Danio rerion vs Takifugu rubripes):
61
(Takifugu rubripes vs Gasterosteus aculeatus) AND (Danio rerion vs Takifugu rubripes):
63
(Takifugu rubripes vs Oryzias latipes) AND (Takifugu rubripes vs Gasterosteus aculeatus) AND (Danio rerion vs Takifugu rubripes):
41